C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tenascin XB
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000546684 TNXB-208 ENSG00000236236 9606 - CHR_HSCHR6_MHC_SSTO_CTG1:32034001-32040437 protein_coding

Expression Patterns

No expression data.

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005178 ISS integrin binding
GO:0005515 IEA protein binding
GO:0005578 NAS proteinaceous extracellular matrix
GO:0005583 IDA fibrillar collagen trimer
GO:0005615 IDA extracellular space
GO:0005622 IDA intracellular
GO:0007155 ISS cell adhesion
GO:0008201 ISS heparin binding
GO:0030036 ISS actin cytoskeleton organization
GO:0031012 IDA extracellular matrix
GO:0032963 IMP collagen metabolic process
GO:0048251 IMP elastic fiber assembly
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000087399 Tnxb-001 protein_coding Mus_musculus 0 2047
ENSMUST00000168533 Tnxb-002 protein_coding Mus_musculus 0 2047
ENSMUST00000173277 Tnxa-001 unprocessed_pseudogene Mus_musculus 0 1022
ENSMUST00000025223 Cyp21a1-001 protein_coding Mus_musculus 1e-25 122

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