C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: LIM and senescent cell antigen-like domains 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000148799 Lims1-005 ENSMUSG00000019920 10090 + 10:58416643-58421664 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainPlacentaENSMUST00000148799
Transcript ID Brain Placenta
ENSMUST00000148799 3.403±0.00 18.534±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007RA CIL_0007RA_0002 VISTA 10:58082278-58683620
CIL_00010T CIL_00010T_0002 CGP 10:58255497-58424691
CIL_00010W CIL_00010W_0002 CGP 10:58323466-58494155

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000324938 LIMS2-005 protein_coding Homo_sapiens 6e-23 113
ENST00000332345 LIMS1-002 protein_coding Homo_sapiens 8.40779e-45 185
ENST00000338045 LIMS1-014 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000355119 LIMS2-001 protein_coding Homo_sapiens 6e-23 113
ENST00000393310 LIMS1-001 protein_coding Homo_sapiens 2.94273e-44 185
ENST00000409254 LIMS2-012 protein_coding Homo_sapiens 3e-23 113
ENST00000409286 LIMS2-009 protein_coding Homo_sapiens 5e-23 113
ENST00000409441 LIMS1-003 protein_coding Homo_sapiens 9.80909e-45 185
ENST00000409455 LIMS2-004 protein_coding Homo_sapiens 7e-23 113
ENST00000409754 LIMS2-008 protein_coding Homo_sapiens 5e-23 113
ENST00000409808 LIMS2-002 protein_coding Homo_sapiens 7e-23 113
ENST00000410011 LIMS2-003 protein_coding Homo_sapiens 7e-23 113
ENST00000410038 LIMS2-006 protein_coding Homo_sapiens 5e-23 113
ENST00000410093 LIMS1-006 protein_coding Homo_sapiens 8.40779e-45 185
ENST00000413578 LIMS2-013 nonsense_mediated_decay Homo_sapiens 3e-23 113
ENST00000426981 LIMS2-007 protein_coding Homo_sapiens 4e-23 113
ENST00000466410 LIMS2-011 retained_intron Homo_sapiens 8e-23 113
ENST00000469300 LIMS2-014 retained_intron Homo_sapiens 1e-17 97
ENST00000476932 LIMS2-017 retained_intron Homo_sapiens 7e-23 113
ENST00000484252 LIMS2-015 retained_intron Homo_sapiens 6e-23 113
ENST00000542845 LIMS1-201 protein_coding Homo_sapiens 2.94273e-44 185
ENST00000544547 LIMS1-202 protein_coding Homo_sapiens 2.94273e-44 185
ENST00000545738 LIMS2-018 protein_coding Homo_sapiens 5e-23 113
ENST00000612860 LIMS2-201 protein_coding Homo_sapiens 5e-23 113

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