C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: transient receptor potential cation channel, subfamily C, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000139104 Trpc2-004 ENSMUSG00000070425 10090 + 7:102075880-102096326 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalColonHeartKidneyOvaryENSMUST00000139104
Transcript ID Adrenal Colon Heart Kidney Ovary
ENSMUST00000139104 1.130±0.00 0.607±0.04 0.515±0.00 0.584±0.13 1.553±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002ZS CIL_0002ZS_0002 CGP 7:102065511-102096864

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000012 IEA single strand break repair
GO:0000139 IDA Golgi membrane
GO:0002121 IMP inter-male aggressive behavior
GO:0002124 IMP territorial aggressive behavior
GO:0003684 IEA damaged DNA binding
GO:0005515 IPI protein binding
GO:0005516 IDA calmodulin binding
GO:0005635 IDA nuclear envelope
GO:0005789 IDA endoplasmic reticulum membrane
GO:0005886 IDA plasma membrane
GO:0006816 IMP calcium ion transport
GO:0007204 IPI positive regulation of cytosolic calcium ion concentration
GO:0007340 IMP acrosome reaction
GO:0008050 IMP female courtship behavior
GO:0010468 IMP regulation of gene expression
GO:0012505 IDA endomembrane system
GO:0015279 IDA store-operated calcium channel activity
GO:0019236 IMP response to pheromone
GO:0019992 IMP diacylglycerol binding
GO:0032590 IMP dendrite membrane
GO:0048047 IMP mating behavior, sex discrimination
GO:0070588 IDA calcium ion transmembrane transport
GO:1902436 IGI negative regulation of male mating behavior

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000451043 TRPC2-001 transcribed_unprocessed_pseudogene Homo_sapiens 0 2362
ENST00000526541 TRPC2-002 processed_transcript Homo_sapiens 0 274

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