C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: glycine receptor, beta subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000135043 Glrb-004 ENSMUSG00000028020 10090 - 3:80843599-80913614 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000135043
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000135043 0.440±0.31 0.308±0.19 0.470±0.00 0.085±0.05 0.087±0.06 0.033±0.01 0.200±0.06 0.019±0.01 1.313±0.57 0.118±0.11 0.066±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007F1 CIL_0007F1_0002 CGP 3:80684936-80913660

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005783 ISA endoplasmic reticulum
GO:0006821 IMP chloride transport
GO:0007340 IMP acrosome reaction
GO:0007601 IMP visual perception
GO:0007628 IMP adult walking behavior
GO:0008144 IPI drug binding
GO:0009897 ISA external side of plasma membrane
GO:0016020 IDA membrane
GO:0016594 IMP glycine binding
GO:0016934 IMP extracellular-glycine-gated chloride channel activity
GO:0042391 IMP regulation of membrane potential
GO:0050905 IMP neuromuscular process
GO:0060012 IMP synaptic transmission, glycinergic
GO:0060013 IMP righting reflex
GO:1902476 IMP chloride transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENST00000264428 GLRB-001 protein_coding Homo_sapiens 0 2036
ENST00000506411 GLRB-003 nonsense_mediated_decay Homo_sapiens 0 664
ENST00000509282 GLRB-002 protein_coding Homo_sapiens 0 1816
ENST00000510970 GLRB-006 retained_intron Homo_sapiens 0 462
ENST00000512619 GLRB-005 protein_coding Homo_sapiens 0 544
ENST00000515642 GLRB-004 nonsense_mediated_decay Homo_sapiens 0 302
ENST00000541722 GLRB-201 protein_coding Homo_sapiens 0 1053

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