C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: intermediate filament family orphan 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000088276 Iffo1-202 ENSMUSG00000038271 10090 + 6:125145241-125161782 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainColonKidneyLiverOvaryPlacentaTestisENSMUST00000088276
Transcript ID Adrenal Brain Colon Kidney Liver Ovary Placenta Testis
ENSMUST00000088276 7.073±0.00 16.128±0.00 2.473±0.00 2.844±0.54 0.748±0.06 8.151±0.00 9.765±0.00 10.180±5.21

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003674 ND molecular_function
GO:0005575 ND cellular_component
GO:0008150 ND biological_process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000125693 iffo2a-202 protein_coding Danio_rerio 0 217
ENSDART00000123011 iffo1b-201 protein_coding Danio_rerio 0 211
ENSDART00000089386 iffo1b-001 protein_coding Danio_rerio 0 211
ENSDART00000089379 iffo2a-201 protein_coding Danio_rerio 0 207
ENSDART00000144686 iffo2a-002 protein_coding Danio_rerio 0 195
ENSDART00000136504 iffo1b-002 processed_transcript Danio_rerio 3e-40 171
ENST00000336604 IFFO1-001 protein_coding Homo_sapiens 0 2069
ENST00000355609 IFFO2-003 protein_coding Homo_sapiens 2.8026e-45 185
ENST00000356896 IFFO1-011 protein_coding Homo_sapiens 0 2056
ENST00000396830 IFFO1-010 retained_intron Homo_sapiens 0 931
ENST00000396840 IFFO1-008 protein_coding Homo_sapiens 0 2111
ENST00000416166 IFFO2-002 protein_coding Homo_sapiens 0 276
ENST00000436152 IFFO1-201 protein_coding Homo_sapiens 0 1245
ENST00000455833 IFFO2-001 protein_coding Homo_sapiens 0 276
ENST00000465801 IFFO1-003 protein_coding Homo_sapiens 0 1258
ENST00000471408 IFFO1-004 retained_intron Homo_sapiens 0 1114
ENST00000472558 IFFO1-005 retained_intron Homo_sapiens 0 946
ENST00000487279 IFFO1-007 nonsense_mediated_decay Homo_sapiens 0 1286
ENST00000488007 IFFO1-006 retained_intron Homo_sapiens 0 819
ENST00000494072 RP13-279N23.2-001 nonsense_mediated_decay Homo_sapiens 0 276
ENST00000615885 IFFO1-202 protein_coding Homo_sapiens 0 1245
ENST00000619571 IFFO1-203 protein_coding Homo_sapiens 0 1170

Loading