C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SLIT-ROBO Rho GTPase activating protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000020322 Srgap1-001 ENSMUSG00000020121 10090 - 10:121780991-122047308 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastHeartKidneyLiverLungMuscleOvaryPlacentaTestisENSMUST00000020322
Transcript ID Adipose Adrenal Brain Breast Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000020322 0.798±0.24 0.114±0.00 10.380±6.08 0.673±0.11 0.273±0.04 0.263±0.00 0.089±0.03 0.839±0.42 0.098±0.05 0.796±0.10 1.146±0.83 0.622±0.13

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006YB CIL_0006YB_0002 CGP 10:121780991-122097371

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005100 IDA Rho GTPase activator activity
GO:0005515 IPI protein binding
GO:0005622 IEA intracellular
GO:0007266 IDA Rho protein signal transduction
GO:0016477 IDA cell migration
GO:0017048 IDA Rho GTPase binding
GO:0032321 IDA positive regulation of Rho GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000048707 srgap2b-201 protein_coding Danio_rerio 0 806
ENSDART00000014897 srgap2b-001 protein_coding Danio_rerio 0 278
ENSDART00000050420 arhgap4a-201 protein_coding Danio_rerio 0.00000002 68
ENSDART00000145307 arhgap4a-001 protein_coding Danio_rerio 0.00000002 68
ENST00000355086 SRGAP1-001 protein_coding Homo_sapiens 0 2313
ENST00000537556 SRGAP1-002 retained_intron Homo_sapiens 0 1759
ENST00000542841 SRGAP1-004 retained_intron Homo_sapiens 0 697
ENST00000543397 SRGAP1-003 protein_coding Homo_sapiens 0 4023

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