C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: AT rich interactive domain 1A (SWI-like)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSMUST00000008024 Arid1a-002 ENSMUSG00000007880 10090 - 4:133679941-133756769 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonLiverLungMuscleOvaryPlacentaTestisENSMUST00000008024
Transcript ID Adipose Adrenal Brain Breast Colon Liver Lung Muscle Ovary Placenta Testis
ENSMUST00000008024 1.567±0.00 12.799±3.40 19.279±0.00 28.993±4.16 19.376±0.88 3.796±1.48 17.433±9.62 0.806±0.00 23.103±2.65 4.823±0.00 4.346±3.31

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007T4 CIL_0007T4_0002 VISTA 4:133429051-134030305

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000122 IDA negative regulation of transcription from RNA polymerase II promoter
GO:0000790 IDA nuclear chromatin
GO:0001843 IMP neural tube closure
GO:0003205 IMP cardiac chamber development
GO:0003408 IMP optic cup formation involved in camera-type eye development
GO:0003677 IEA DNA binding
GO:0005515 IPI protein binding
GO:0006325 IPI chromatin organization
GO:0006351 IEA transcription, DNA-templated
GO:0016514 IDA:ISS SWI/SNF complex
GO:0030520 ISS intracellular estrogen receptor signaling pathway
GO:0030521 ISS androgen receptor signaling pathway
GO:0030900 IMP forebrain development
GO:0031491 IDA nucleosome binding
GO:0043044 IDA ATP-dependent chromatin remodeling
GO:0045893 ISS positive regulation of transcription, DNA-templated
GO:0060674 IMP placenta blood vessel development
GO:0071564 IDA npBAF complex
GO:0071565 IDA nBAF complex
GO:0090544 IDA BAF-type complex
GO:1901998 IMP toxin transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSDART00000140747 arid1ab-001 protein_coding Danio_rerio 0 392
ENST00000324856 ARID1A-001 protein_coding Homo_sapiens 0 8560
ENST00000374152 ARID1A-003 protein_coding Homo_sapiens 0 8059
ENST00000430291 ARID1A-005 retained_intron Homo_sapiens 0 512
ENST00000430799 ARID1A-009 protein_coding Homo_sapiens 0 5365
ENST00000457599 ARID1A-002 protein_coding Homo_sapiens 0 4279
ENST00000466382 ARID1A-004 nonsense_mediated_decay Homo_sapiens 0 3022
ENST00000524572 ARID1A-007 protein_coding Homo_sapiens 0 521
ENST00000532781 ARID1A-006 nonsense_mediated_decay Homo_sapiens 0 2604
ENST00000615191 ARID1A-201 protein_coding Homo_sapiens 0 5053

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