C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: jumonji, AT rich interactive domain 2a
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENSDART00000086333 jarid2a-001 ENSDARG00000060925 7955 + 16:27646360-27740010 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainKidneyLiverMuscleENSDART00000086333
Transcript ID Brain Kidney Liver Muscle
ENSDART00000086333 3.123±1.00 0.105±0.00 0.162±0.00 0.905±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001BY CIL_0001BY_0001 CGP 16:27646360-27774711

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding
GO:0005515 IEA protein binding
GO:0005622 IEA intracellular
GO:0005634 IEA nucleus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000044608 Jarid2-002 protein_coding Mus_musculus 0 425
ENSMUST00000172581 Jarid2-012 processed_transcript Mus_musculus 0.000008 55
ENSMUST00000172830 Jarid2-015 protein_coding Mus_musculus 5e-18 95
ENSMUST00000172924 Jarid2-010 processed_transcript Mus_musculus 0.00001 55
ENSMUST00000172977 Jarid2-014 nonsense_mediated_decay Mus_musculus 7e-18 95
ENSMUST00000173246 Jarid2-001 protein_coding Mus_musculus 0 425
ENSMUST00000173367 Jarid2-007 protein_coding Mus_musculus 0.00003 55
ENSMUST00000173704 Jarid2-003 protein_coding Mus_musculus 0 425
ENSMUST00000173906 Jarid2-006 protein_coding Mus_musculus 0 425
ENSMUST00000174068 Jarid2-011 protein_coding Mus_musculus 7e-18 95
ENSMUST00000174557 Jarid2-004 retained_intron Mus_musculus 1e-17 95
ENSMUST00000174683 Jarid2-005 retained_intron Mus_musculus 1e-29 137
ENST00000341776 JARID2-001 protein_coding Homo_sapiens 0 424
ENST00000397311 JARID2-201 protein_coding Homo_sapiens 0 424
ENST00000474854 JARID2-002 processed_transcript Homo_sapiens 6.99949e-42 174

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