C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000624550 AC005480.1-201 ENSG00000279461 9606 + 14:74003369-74003777 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000624550
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000624550 0.404±0.00 0.815±0.00 0.320±0.00 0.534±0.00 0.488±0.00 0.156±0.00 1.049±0.00 0.078±0.00 0.459±0.00 0.486±0.00 0.400±0.00 0.247±0.18

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00089E CIL_00089E_0001 VISTA 14:73441559-74042582
CIL_0002U9 CIL_0002U9_0002 CGP 14:73949926-74019399

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003735 IEA structural constituent of ribosome
GO:0005840 IEA ribosome
GO:0006412 IEA translation

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000176010 Rpl41-001 protein_coding Mus_musculus 2e-21 106
ENSMUST00000073238 Gm10076-201 protein_coding Mus_musculus 2e-21 106
ENSMUST00000176683 Rpl41-003 protein_coding Mus_musculus 2e-20 102
ENSMUST00000177163 Rpl41-002 protein_coding Mus_musculus 2e-20 102
ENSMUST00000086236 Gm10180-201 processed_pseudogene Mus_musculus 9e-20 100
ENSMUST00000179668 Gm10736-201 processed_pseudogene Mus_musculus 9e-20 100
ENSMUST00000178135 Gm3699-201 processed_pseudogene Mus_musculus 9e-20 100
ENSMUST00000176184 Rpl41-004 retained_intron Mus_musculus 7e-16 88
ENSMUST00000177513 Rpl41-006 retained_intron Mus_musculus 7e-16 88
ENSMUST00000176906 Rpl41-007 protein_coding Mus_musculus 0.0000000003 69

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