C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: calcium channel, voltage-dependent, L type, alpha 1C subunit
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620878 CACNA1C-204 ENSG00000151067 9606 + 12:2448976-2697949 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainColonMuscleENST00000620878
Transcript ID Brain Colon Muscle
ENST00000620878 0.356±0.00 0.802±0.00 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003XI CIL_0003XI_0002 CGP 12:1820267-2004535
CIL_0003XH CIL_0003XH_0002 CGP 12:1946054-2697950

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005216 IEA ion channel activity
GO:0006811 IEA ion transport
GO:0016020 IEA membrane
GO:0055085 IEA transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000188106 Cacna1c-011 protein_coding Mus_musculus 0 5291
ENSMUST00000187940 Cacna1c-002 protein_coding Mus_musculus 0 4748
ENSMUST00000112790 Cacna1c-005 protein_coding Mus_musculus 0 4626
ENSMUST00000187474 Cacna1c-008 protein_coding Mus_musculus 0 4599
ENSMUST00000075591 Cacna1c-024 protein_coding Mus_musculus 0 4477
ENSMUST00000078320 Cacna1c-004 protein_coding Mus_musculus 0 4477
ENSMUST00000186889 Cacna1c-001 protein_coding Mus_musculus 0 4477
ENSMUST00000188865 Cacna1c-020 protein_coding Mus_musculus 0 4455
ENSMUST00000189389 Cacna1c-016 protein_coding Mus_musculus 0 4427
ENSMUST00000189520 Cacna1c-017 protein_coding Mus_musculus 0 4305
ENSMUST00000188078 Cacna1c-015 protein_coding Mus_musculus 0 4305
ENSMUST00000187386 Cacna1c-006 protein_coding Mus_musculus 0 3555
ENSMUST00000188522 Cacna1c-014 protein_coding Mus_musculus 0 3555
ENSMUST00000112793 Cacna1c-010 protein_coding Mus_musculus 0 3434
ENSMUST00000190285 Cacna1c-007 protein_coding Mus_musculus 0 3406
ENSMUST00000112825 Cacna1c-201 protein_coding Mus_musculus 0 3310
ENSMUST00000188181 Cacna1c-012 processed_transcript Mus_musculus 0 3310
ENSMUST00000185345 Cacna1c-019 protein_coding Mus_musculus 0 3007
ENSMUST00000187317 Cacna1c-018 protein_coding Mus_musculus 0 3007
ENSDART00000028856 cacna1c-201 protein_coding Danio_rerio 0 2089
ENSDART00000132909 cacna1c-001 protein_coding Danio_rerio 0 2013
ENSMUST00000161865 Cacna1s-003 protein_coding Mus_musculus 0 1434
ENSMUST00000112068 Cacna1s-001 protein_coding Mus_musculus 0 1434
ENSDART00000089956 cacna1da-201 protein_coding Danio_rerio 0 1428
ENSDART00000058276 cacna1da-001 protein_coding Danio_rerio 0 1428
ENSMUST00000112250 Cacna1d-202 protein_coding Mus_musculus 0 944
ENSMUST00000112249 Cacna1d-201 protein_coding Mus_musculus 0 944
ENSDART00000100118 cacna1da-202 protein_coding Danio_rerio 0 712
ENSMUST00000112064 Cacna1s-201 protein_coding Mus_musculus 0 708
ENSMUST00000160641 Cacna1s-002 protein_coding Mus_musculus 0 708
ENSMUST00000191196 Cacna1c-021 processed_transcript Mus_musculus 0 545
ENSDART00000065375 cacna1db-201 protein_coding Danio_rerio 0 492
ENSMUST00000187849 Cacna1c-023 processed_transcript Mus_musculus 0 472
ENSDART00000062406 cacna1sb-001 protein_coding Danio_rerio 0 359
ENSDART00000041564 cacna1f-201 protein_coding Danio_rerio 0 350
ENSDART00000134151 cacna1f-001 protein_coding Danio_rerio 0 350
ENSMUST00000155090 Cacna1f-003 nonsense_mediated_decay Mus_musculus 0 1155
ENSMUST00000115726 Cacna1f-001 protein_coding Mus_musculus 0 1155
ENSMUST00000115725 Cacna1f-002 protein_coding Mus_musculus 0 1219
ENSMUST00000141634 Cacna1f-004 retained_intron Mus_musculus 0 1155
ENSDART00000105895 cacna1sa-001 protein_coding Danio_rerio 0 383

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