C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cleavage and polyadenylation specific factor 1, 160kDa
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000620219 CPSF1-001 ENSG00000071894 9606 - 8:144393318-144409288 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000620219
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000620219 6.116±0.00 12.762±0.00 2.843±2.04 3.967±1.39 2.266±0.46 2.925±0.00 2.261±1.58 3.211±1.96 3.050±2.10 0.455±0.00 9.529±0.00 14.193±2.28

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007SS CIL_0007SS_0001 VISTA 8:143880613-144482307
CIL_0006LZ CIL_0006LZ_0002 CGP 8:144373101-144409349
CIL_00026S CIL_00026S_0001 CGP 8:144393229-144416895

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000398 TAS mRNA splicing, via spliceosome
GO:0003676 IEA nucleic acid binding
GO:0003730 IDA mRNA 3'-UTR binding
GO:0005515 IPI protein binding
GO:0005634 IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0005847 IDA mRNA cleavage and polyadenylation specificity factor complex
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0006369 TAS termination of RNA polymerase II transcription
GO:0006378 IDA mRNA polyadenylation
GO:0006379 IDA mRNA cleavage
GO:0006406 TAS mRNA export from nucleus
GO:0008380 TAS RNA splicing
GO:0010467 TAS gene expression
GO:0031124 TAS mRNA 3'-end processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071898 Cpsf1-201 protein_coding Mus_musculus 0 5012

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