C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nuclear receptor subfamily 2, group C, member 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000617312 NR2C2-202 ENSG00000177463 9606 + 3:15003915-15049273 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000617312
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000617312 5.316±0.00 5.647±0.00 6.514±0.00 4.418±0.00 4.117±0.03 2.630±0.00 3.962±1.33 1.801±0.00 5.165±0.08 5.053±0.00 4.557±1.72 6.921±1.41

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005AG CIL_0005AG_0001 CGP 3:14818962-15053600
CIL_0005AF CIL_0005AF_0001 CGP 3:14947584-15065335

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003700 IDA:IEA sequence-specific DNA binding transcription factor activity
GO:0003707 IEA steroid hormone receptor activity
GO:0003713 TAS transcription coactivator activity
GO:0004872 TAS receptor activity
GO:0005515 IPI protein binding
GO:0005634 IDA:IEA nucleus
GO:0005654 TAS nucleoplasm
GO:0006355 TAS:IEA regulation of transcription, DNA-templated
GO:0006367 TAS transcription initiation from RNA polymerase II promoter
GO:0007283 IEA spermatogenesis
GO:0007399 TAS nervous system development
GO:0008270 IEA zinc ion binding
GO:0010467 TAS gene expression
GO:0021549 IEA cerebellum development
GO:0030154 IEA cell differentiation
GO:0040019 IEA positive regulation of embryonic development
GO:0043401 IEA steroid hormone mediated signaling pathway
GO:0043565 IDA:IEA sequence-specific DNA binding
GO:0045944 IDA positive regulation of transcription from RNA polymerase II promoter
GO:0046982 IDA protein heterodimerization activity
GO:0048520 IEA positive regulation of behavior
GO:0051321 IEA meiotic cell cycle

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000113463 Nr2c2-002 protein_coding Mus_musculus 0 2475
ENSMUST00000113460 Nr2c2-001 protein_coding Mus_musculus 0 2475
ENSMUST00000146175 Nr2c2-003 nonsense_mediated_decay Mus_musculus 0 2019
ENSDART00000011597 nr2c2-201 protein_coding Danio_rerio 0 460
ENSDART00000125232 nr2c2-001 protein_coding Danio_rerio 0 460
ENSMUST00000140438 Mrps25-001 protein_coding Mus_musculus 0 379
ENSMUST00000133321 Nr2c2-004 processed_transcript Mus_musculus 0 302

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