C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: U2 small nuclear RNA auxiliary factor 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000590551 U2AF2-008 ENSG00000063244 9606 + 19:55662499-55674239 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000590551
Transcript ID Bladder Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000590551 1.679±0.00 7.408±0.00 11.533±5.65 1.229±0.00 11.093±8.17 4.252±0.00 5.459±0.00 5.166±2.12 49.848±51.57 45.797±27.06 88.203±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006S5 CIL_0006S5_0001 CGP 19:55641062-55674715
CIL_0003U5 CIL_0003U5_0001 CGP 19:55654146-55709858

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0005634 IEA nucleus
GO:0006397 IEA mRNA processing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000165399 U2af2-202 protein_coding Mus_musculus 0 1434
ENSMUST00000005041 U2af2-201 protein_coding Mus_musculus 0 1382
ENSMUST00000118127 Gm7061-001 processed_pseudogene Mus_musculus 0 1029
ENSDART00000008535 u2af2a-001 protein_coding Danio_rerio 0 614
ENSDART00000124875 u2af2a-201 protein_coding Danio_rerio 0 568

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