C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: protein kinase C, alpha
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000578063 PRKCA-001 ENSG00000154229 9606 + 17:66302636-66703864 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; TestisENST00000578063
Transcript ID Testis
ENST00000578063 0.941±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003AL CIL_0003AL_0003 CGP 17:66302636-66885486

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005737 IDA cytoplasm
GO:0005886 IDA plasma membrane
GO:0035556 IEA intracellular signal transduction
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000059595 Prkca-001 protein_coding Mus_musculus 0 1421
ENSMUST00000064921 Prkcb-003 protein_coding Mus_musculus 0 521
ENSMUST00000064989 Prkcb-001 protein_coding Mus_musculus 0 521
ENSMUST00000143692 Prkcb-002 nonsense_mediated_decay Mus_musculus 0 521
ENSMUST00000134725 Prkca-002 processed_transcript Mus_musculus 0 433
ENSDART00000137211 prkcba-002 protein_coding Danio_rerio 0 291
ENSDART00000006211 prkcba-001 protein_coding Danio_rerio 0 291
ENSDART00000142610 prkcg-001 protein_coding Danio_rerio 0 248
ENSMUST00000133383 Apoh-002 protein_coding Mus_musculus 0.000002 58

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