C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000559655 RP11-83J16.3-001 ENSG00000259751 9606 - 15:34849137-34850395 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonKidneyMuscleOvaryPlacentaTestisENST00000559655
Transcript ID Adrenal Brain Breast Colon Kidney Muscle Ovary Placenta Testis
ENST00000559655 0.168±0.00 0.039±0.00 0.025±0.00 0.011±0.00 0.072±0.00 0.010±0.00 0.222±0.25 0.045±0.00 0.044±0.03

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VH CIL_0008VH_0001 VISTA 15:34591431-35191947
CIL_0006HF CIL_0006HF_0001 CGP 15:34788096-34969839

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000097014 Tuba1a-001 protein_coding Mus_musculus 0 536
ENSMUST00000122404 Gm14150-001 processed_pseudogene Mus_musculus 0 529
ENSMUST00000029297 Slc7a11-001 protein_coding Mus_musculus 0 359
ENSDART00000009277 tuba1a-001 protein_coding Danio_rerio 0 292
ENSDART00000077539 tuba1c-001 protein_coding Danio_rerio 0 292
ENSMUST00000169666 Gm6682-201 processed_pseudogene Mus_musculus 0 289
ENSMUST00000169182 Gm3756-201 processed_pseudogene Mus_musculus 0 278
ENSDART00000123518 tuba1b-001 protein_coding Danio_rerio 0 278
ENSMUST00000119255 Gm11870-001 processed_pseudogene Mus_musculus 0 268

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