C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: synaptotagmin-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000543823 SYTL1-010 ENSG00000142765 9606 + 1:27344873-27353930 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyLiverOvaryPlacentaTestisENST00000543823
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Liver Ovary Placenta Testis
ENST00000543823 0.063±0.00 5.265±0.00 0.574±0.22 0.327±0.00 0.069±0.00 0.206±0.00 0.425±0.00 1.461±0.00 0.868±0.00 0.417±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008WN CIL_0008WN_0001 VISTA 1:27203963-27805666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI:IEA protein binding
GO:0005886 IDA plasma membrane
GO:0006886 IEA intracellular protein transport
GO:0006887 IEA:IDA exocytosis
GO:0016020 IEA membrane
GO:0017137 IEA Rab GTPase binding
GO:0019897 ISS extrinsic component of plasma membrane
GO:0042043 ISS neurexin family protein binding
GO:0042470 ISS melanosome
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030674 Sytl1-001 protein_coding Mus_musculus 0 1535
ENSMUST00000142039 Sytl1-002 processed_transcript Mus_musculus 0 728
ENSMUST00000105908 Sytl1-004 protein_coding Mus_musculus 0 556
ENSMUST00000154911 Sytl1-003 processed_transcript Mus_musculus 0 270

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