C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAB6A, member RAS oncogene family
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000541973 RAB6A-006 ENSG00000175582 9606 - 11:73677399-73760095 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000541973
Transcript ID Adipose Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000541973 18.868±0.00 15.639±0.00 9.267±1.08 5.321±0.00 6.844±0.00 12.030±0.00 17.120±0.00 6.560±0.00 14.426±2.69 32.778±0.00 12.051±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003JC CIL_0003JC_0002 CGP 11:73646178-73761137

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003924 IEA GTPase activity
GO:0005525 IEA GTP binding
GO:0005622 IEA intracellular
GO:0006184 IEA GTP catabolic process
GO:0006886 IEA intracellular protein transport
GO:0006913 IEA nucleocytoplasmic transport
GO:0007165 IEA signal transduction
GO:0007264 IEA small GTPase mediated signal transduction
GO:0015031 IEA protein transport
GO:0016020 IEA membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000098252 Rab6a-002 protein_coding Mus_musculus 0 1347
ENSMUST00000107048 Rab6a-003 protein_coding Mus_musculus 0 1345
ENSMUST00000032946 Rab6a-001 protein_coding Mus_musculus 0 1186
ENSMUST00000118877 Gm13082-001 processed_pseudogene Mus_musculus 0 643
ENSDART00000129190 rab6a-002 protein_coding Danio_rerio 0 562
ENSMUST00000123960 Rab6a-004 retained_intron Mus_musculus 0 396
ENSDART00000075056 zgc:63637-002 protein_coding Danio_rerio 0 388
ENSDART00000126805 rab6a-003 retained_intron Danio_rerio 0 366

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