C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box helicase 6
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534980 DDX6-001 ENSG00000110367 9606 - 11:118749325-118791136 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverLungMuscleOvaryENST00000534980
Transcript ID Bladder Brain Breast Colon Heart Liver Lung Muscle Ovary
ENST00000534980 4.865±0.00 9.096±0.00 10.758±0.00 11.347±0.00 6.284±0.00 14.682±0.00 14.774±0.00 3.468±0.00 9.150±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002BV CIL_0002BV_0002 CGP 11:118657316-118791149
CIL_00021W CIL_00021W_0002 CGP 11:118747766-118897799

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0000932 IDA cytoplasmic mRNA processing body
GO:0003676 IEA nucleic acid binding
GO:0003724 TAS RNA helicase activity
GO:0004386 TAS helicase activity
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006200 IEA ATP catabolic process
GO:0008026 IEA ATP-dependent helicase activity
GO:0010467 TAS gene expression
GO:0010494 IDA cytoplasmic stress granule
GO:0016020 IDA membrane
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0016442 IDA RISC complex
GO:0033962 IDA cytoplasmic mRNA processing body assembly
GO:0043231 IDA intracellular membrane-bounded organelle
GO:0043928 TAS exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0044822 IDA poly(A) RNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000170489 Ddx6-201 protein_coding Mus_musculus 0 3555
ENSMUST00000117058 Gm13410-001 processed_pseudogene Mus_musculus 0 1683

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