C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, alpha 6 (neuronal)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000534622 CHRNA6-004 ENSG00000147434 9606 - 8:42752927-42768610 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastMuscleOvaryPlacentaTestisENST00000534622
Transcript ID Adrenal Brain Breast Muscle Ovary Placenta Testis
ENST00000534622 0.007±0.00 0.146±0.05 0.023±0.00 0.023±0.00 0.021±0.00 0.022±0.00 0.035±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002IT CIL_0002IT_0001 CGP 8:42697376-42796392

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005886 TAS plasma membrane
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 TAS cation transport
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015464 TAS acetylcholine receptor activity
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane
GO:0030054 IEA cell junction
GO:0045211 IEA postsynaptic membrane
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000033882 Chrna6-201 protein_coding Mus_musculus 0 1092

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