C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SUMO2 pseudogene 20
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000520803 SUMO2P20-001 ENSG00000253721 9606 - 8:69987415-69987697 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonOvaryENST00000520803
Transcript ID Adipose Adrenal Breast Colon Ovary
ENST00000520803 0.042±0.00 0.044±0.00 0.042±0.00 0.040±0.00 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003BE CIL_0003BE_0001 CGP 8:69667047-70071693

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000117664 Gm10241-001 processed_pseudogene Mus_musculus 0 357
ENSMUST00000153892 Sumo2-001 protein_coding Mus_musculus 0 357
ENSMUST00000121569 Smt3h2-ps4-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000117589 Sumo2-004 protein_coding Mus_musculus 0 348
ENSMUST00000118989 Gm13690-001 processed_pseudogene Mus_musculus 0 346
ENSMUST00000021084 Sumo2-002 nonsense_mediated_decay Mus_musculus 0 342
ENSMUST00000119738 Gm12335-001 processed_pseudogene Mus_musculus 0 340
ENSMUST00000121185 Sumo2-003 protein_coding Mus_musculus 0 340
ENSMUST00000117715 Gm11971-001 processed_pseudogene Mus_musculus 0 339
ENSMUST00000121366 Gm13430-001 processed_pseudogene Mus_musculus 0 324
ENSMUST00000122370 Smt3h2-ps2-001 processed_pseudogene Mus_musculus 0 318
ENSMUST00000097581 Gm10540-201 processed_pseudogene Mus_musculus 0 307
ENSMUST00000121084 Smt3h2-ps-001 processed_pseudogene Mus_musculus 0 303
ENSMUST00000122297 Gm12755-001 unprocessed_pseudogene Mus_musculus 0 300
ENSMUST00000140844 Sumo2-006 retained_intron Mus_musculus 0 267
ENSMUST00000119430 Samd8-003 protein_coding Mus_musculus 0 224
ENSMUST00000050672 Sumo2-005 retained_intron Mus_musculus 0 202
ENSMUST00000118155 Sumo2-007 protein_coding Mus_musculus 0 200
ENSMUST00000117132 Gm9836-001 processed_pseudogene Mus_musculus 0 195

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