C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: homeobox A11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000517402 HOXA11-002 ENSG00000005073 9606 - 7:27181510-27185223 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000517402
Transcript ID Adipose Adrenal Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000517402 0.709±0.00 0.384±0.00 0.444±0.29 7.667±0.00 3.602±0.00 1.588±0.00 0.025±0.00 1.194±0.77 1.453±1.39 7.944±2.62 1.162±0.12

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007OD CIL_0007OD_0002 UCNEbase 7:26506344-27606703
CIL_0008QL CIL_0008QL_0001 VISTA 7:26816432-27417045
CIL_000911 CIL_000911_0001 VISTA 7:26910239-27511438
CIL_000811 CIL_000811_0001 VISTA 7:26948649-27549872
CIL_00097P CIL_00097P_0001 VISTA 7:27075631-27678581
CIL_0003P7 CIL_0003P7_0001 CGP 7:27170591-27185223
CIL_0003P8 CIL_0003P8_0001 CGP 7:27181510-27200106

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003677 IEA DNA binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000131495 Hoxa11-002 processed_transcript Mus_musculus 0 1587
ENSMUST00000048026 Hoxa11-001 protein_coding Mus_musculus 0 1469
ENSDART00000082355 hoxd4a-001 protein_coding Danio_rerio 0.000003 58

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