C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cadherin 6, type 2, K-cadherin (fetal kidney)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000514738 CDH6-003 ENSG00000113361 9606 + 5:31193750-31318346 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLungOvaryPlacentaTestisENST00000514738
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Lung Ovary Placenta Testis
ENST00000514738 0.790±0.00 0.551±0.00 1.377±0.00 0.512±0.00 0.546±0.00 0.344±0.01 0.102±0.00 0.448±0.00 0.494±0.00 0.593±0.38 0.076±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006MJ CIL_0006MJ_0003 CGP 5:26880600-31329146
CIL_0008PA CIL_0008PA_0001 VISTA 5:30691085-31296140
CIL_0008DF CIL_0008DF_0001 VISTA 5:30694176-31295940

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005509 IEA calcium ion binding
GO:0005886 IEA plasma membrane
GO:0007156 IEA homophilic cell adhesion via plasma membrane adhesion molecules
GO:0016020 IEA membrane
GO:0016021 IEA integral component of membrane

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000036439 Cdh6-201 protein_coding Mus_musculus 0 2593
ENSMUST00000176146 Cdh10-003 nonsense_mediated_decay Mus_musculus 0 501
ENSMUST00000040562 Cdh10-002 protein_coding Mus_musculus 0 501
ENSMUST00000166873 Cdh10-001 protein_coding Mus_musculus 0 501
ENSMUST00000176593 Cdh10-005 retained_intron Mus_musculus 0 477

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