C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: DEAD (Asp-Glu-Ala-Asp) box polypeptide 46
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000507392 DDX46-005 ENSG00000145833 9606 + 5:134758779-134829039 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainBreastColonHeartLungMuscleOvaryTestisENST00000507392
Transcript ID Brain Breast Colon Heart Lung Muscle Ovary Testis
ENST00000507392 4.012±0.00 4.555±0.00 5.029±0.00 2.482±0.00 1.537±0.00 3.481±0.00 1.931±0.00 7.501±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007JT CIL_0007JT_0002 UCNEbase 5:134524545-135264654
CIL_0009AP CIL_0009AP_0001 VISTA 5:134719818-135321709
CIL_0005XR CIL_0005XR_0001 CGP 5:134738501-134855133
CIL_0005XQ CIL_0005XQ_0001 CGP 5:134758779-134859737

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003676 IEA nucleic acid binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000172272 Ddx46-202 protein_coding Mus_musculus 0 1962
ENSMUST00000099479 Ddx46-201 protein_coding Mus_musculus 0 1810

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