C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 11
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000498068 RPL5P11-001 ENSG00000242882 9606 - 4:173419245-173420137 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000498068
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000498068 0.054±0.00 0.137±0.00 0.266±0.23 0.053±0.00 0.453±0.39 0.052±0.00 0.068±0.00 0.112±0.10 0.125±0.04 0.074±0.00 0.042±0.03 0.025±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VG CIL_0008VG_0001 VISTA 4:173198350-173802625
CIL_0008BZ CIL_0008BZ_0001 VISTA 4:173215162-173815719
CIL_00080O CIL_00080O_0001 VISTA 4:173380161-173984834

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 438
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 438
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 438
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 435
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 422
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 412
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000140659 Rpl5-005 retained_intron Mus_musculus 0 405
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 329
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 302
ENSMUST00000121088 Gm11307-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 250
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 250
ENSMUST00000151767 Rpl5-006 retained_intron Mus_musculus 0 235

Loading