C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000493920 RP11-251G23.2-001 ENSG00000223886 9606 + 7:105530209-105530671 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; ColonHeartKidneyMuscleOvaryPlacentaTestisENST00000493920
Transcript ID Colon Heart Kidney Muscle Ovary Placenta Testis
ENST00000493920 0.037±0.00 0.036±0.00 0.194±0.00 0.237±0.00 0.144±0.00 0.143±0.00 0.199±0.16

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00040X CIL_00040X_0001 CGP 7:105439661-105567677

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129233 Rnf181-006 nonsense_mediated_decay Mus_musculus 0 357
ENSMUST00000154098 Rnf181-002 protein_coding Mus_musculus 0 346
ENSMUST00000069580 Rnf181-001 protein_coding Mus_musculus 0 346
ENSMUST00000133978 Rnf181-004 retained_intron Mus_musculus 0 316
ENSMUST00000151063 Rnf181-013 nonsense_mediated_decay Mus_musculus 0 239
ENSMUST00000126065 Rnf181-005 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000130064 Rnf181-010 protein_coding Mus_musculus 0 237
ENSMUST00000125554 Rnf181-007 nonsense_mediated_decay Mus_musculus 0 237
ENSMUST00000069595 Rnf181-003 protein_coding Mus_musculus 0 237
ENSMUST00000149296 Rnf181-012 nonsense_mediated_decay Mus_musculus 0 209
ENSMUST00000136707 Rnf181-011 retained_intron Mus_musculus 5e-33 145
ENSMUST00000114095 Rnf181-009 protein_coding Mus_musculus 5e-33 145

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