C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000486625 CTD-2161E19.1-001 ENSG00000242477 9606 - 5:86884231-86884881 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryPlacentaTestisENST00000486625
Transcript ID Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000486625 0.136±0.00 0.057±0.00 0.047±0.02 0.303±0.12 0.024±0.00 0.239±0.21 0.073±0.00 0.220±0.18 0.212±0.00 0.253±0.08 0.084±0.01 0.024±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005TN CIL_0005TN_0002 CGP 5:86617904-87391931

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000120360 Rpl10a-ps1-001 processed_pseudogene Mus_musculus 0 682
ENSMUST00000042334 Rpl10a-001 protein_coding Mus_musculus 0 682
ENSMUST00000116410 Gm13573-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000071184 Rpl10a-ps2-001 processed_pseudogene Mus_musculus 0 556
ENSMUST00000129935 Rpl10a-002 nonsense_mediated_decay Mus_musculus 0 514
ENSMUST00000150103 Rpl10a-005 retained_intron Mus_musculus 0 368
ENSMUST00000141049 Rpl10a-007 retained_intron Mus_musculus 0 361

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