C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: tRNA selenocysteine 1 associated protein 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000480930 TRNAU1AP-002 ENSG00000180098 9606 + 1:28553099-28577744 processed_transcript

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungOvaryPlacentaTestisENST00000480930
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Ovary Placenta Testis
ENST00000480930 3.623±0.00 6.692±0.00 2.942±0.00 6.243±0.00 3.877±0.00 3.182±0.00 3.590±0.00 3.268±0.00 5.314±0.00 6.263±3.45 6.974±2.17 3.829±1.30

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000147652 Trnau1ap-003 nonsense_mediated_decay Mus_musculus 0 1435
ENSMUST00000146166 Trnau1ap-002 retained_intron Mus_musculus 0 894
ENSMUST00000030730 Trnau1ap-001 protein_coding Mus_musculus 0 891
ENSMUST00000150959 Trnau1ap-011 processed_transcript Mus_musculus 0 466
ENSMUST00000105962 Trnau1ap-007 protein_coding Mus_musculus 0 466
ENSMUST00000131524 Trnau1ap-008 processed_transcript Mus_musculus 0 453
ENSMUST00000125513 Trnau1ap-009 nonsense_mediated_decay Mus_musculus 0 448
ENSMUST00000137520 Trnau1ap-006 nonsense_mediated_decay Mus_musculus 0 442
ENSMUST00000127402 Trnau1ap-012 protein_coding Mus_musculus 0 364
ENSMUST00000141317 Trnau1ap-005 retained_intron Mus_musculus 0 215

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