C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description:
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000444020 RP11-1029M24.1-001 ENSG00000236768 9606 - 3:48120669-48121215 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000444020
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000444020 0.197±0.00 0.232±0.00 0.026±0.00 0.102±0.00 0.095±0.00 0.092±0.00 0.052±0.00 0.046±0.00 0.216±0.00 0.090±0.00 0.037±0.00 0.115±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007U6 CIL_0007U6_0001 VISTA 3:47843366-48458182

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000121001 Rpl17-ps5-001 processed_pseudogene Mus_musculus 0 625
ENSMUST00000118924 Rpl17-ps8-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000119541 Rpl17-ps9-001 processed_pseudogene Mus_musculus 0 619
ENSMUST00000079716 Rpl17-201 protein_coding Mus_musculus 0 619
ENSMUST00000119383 Rpl17-ps10-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000120241 Rpl17-ps4-001 processed_pseudogene Mus_musculus 0 603
ENSMUST00000085340 Gm10268-201 processed_pseudogene Mus_musculus 0 597
ENSMUST00000117614 Gm11531-001 processed_pseudogene Mus_musculus 0 586
ENSMUST00000173076 Gm3617-001 processed_pseudogene Mus_musculus 0 575
ENSMUST00000160969 Gm15795-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000119156 Rpl17-ps1-001 processed_pseudogene Mus_musculus 0 562
ENSMUST00000162765 Gm9719-001 processed_pseudogene Mus_musculus 0 545
ENSMUST00000185778 RP24-178O17.1-001 processed_pseudogene Mus_musculus 0 532
ENSMUST00000164501 Gm17214-001 processed_pseudogene Mus_musculus 0 516
ENSMUST00000119731 Gm4986-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000189856 RP23-110B5.4-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000120579 Gm11343-001 processed_pseudogene Mus_musculus 0 510
ENSMUST00000119137 Gm15497-001 processed_pseudogene Mus_musculus 0 505
ENSMUST00000185744 RP23-304F24.3-001 processed_pseudogene Mus_musculus 0 492
ENSMUST00000146593 Gm15843-001 processed_pseudogene Mus_musculus 0 486
ENSMUST00000121960 Gm14441-001 processed_pseudogene Mus_musculus 0 462
ENSMUST00000120830 Gm13665-001 processed_pseudogene Mus_musculus 0 446
ENSMUST00000139696 Gm8062-001 processed_pseudogene Mus_musculus 0 444
ENSMUST00000117990 Gm7831-001 processed_pseudogene Mus_musculus 0 431
ENSMUST00000119012 Gm12380-001 processed_pseudogene Mus_musculus 0 418
ENSMUST00000187749 RP23-305F24.2-001 processed_pseudogene Mus_musculus 0 390
ENSMUST00000164923 Gm5277-201 protein_coding Mus_musculus 0 387
ENSMUST00000121672 Gm11363-001 processed_pseudogene Mus_musculus 0 351
ENSMUST00000118067 Gm11380-001 processed_pseudogene Mus_musculus 0 337
ENSMUST00000117144 Gm6429-001 processed_pseudogene Mus_musculus 0 327
ENSMUST00000162128 Gm16111-001 processed_pseudogene Mus_musculus 0 315
ENSMUST00000118406 Gm15002-001 processed_pseudogene Mus_musculus 0 309

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