C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 51
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000443470 NPM1P51-001 ENSG00000230913 9606 + 6:41666906-41667649 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLungMuscleOvaryTestisENST00000443470
Transcript ID Adipose Adrenal Brain Breast Colon Heart Lung Muscle Ovary Testis
ENST00000443470 0.015±0.00 0.033±0.00 0.048±0.00 0.081±0.00 0.461±0.00 0.072±0.00 0.047±0.00 0.014±0.00 0.040±0.00 0.516±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008F3 CIL_0008F3_0001 VISTA 6:41112821-41713777
CIL_0007QG CIL_0007QG_0001 VISTA 6:41166717-41767957
CIL_0008IB CIL_0008IB_0001 VISTA 6:41169077-41770286
CIL_0008XI CIL_0008XI_0001 VISTA 6:41187113-41790491
CIL_00093V CIL_00093V_0001 VISTA 6:41255486-41855939
CIL_000963 CIL_000963_0001 VISTA 6:41292979-41894337
CIL_00028Y CIL_00028Y_0002 CGP 6:41636882-41736259

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000101375 Npm1-003 protein_coding Mus_musculus 0 706
ENSMUST00000109354 Npm1-002 protein_coding Mus_musculus 0 706
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 706
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 689
ENSMUST00000168993 Gm7289-001 processed_pseudogene Mus_musculus 0 601
ENSMUST00000172394 Gm17060-001 processed_pseudogene Mus_musculus 0 569
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 294
ENSMUST00000146759 Npm1-005 processed_transcript Mus_musculus 0 239
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 3e-36 156
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 8e-18 95

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