C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L21 pseudogene 135
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000442539 RPL21P135-001 ENSG00000235482 9606 + 3:37748110-37748900 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000442539
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000442539 0.140±0.00 0.271±0.00 0.169±0.00 0.572±0.00 0.268±0.00 0.138±0.00 0.214±0.01 0.072±0.04 0.282±0.16 0.082±0.00 0.131±0.14 0.206±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0005VQ CIL_0005VQ_0001 CGP 3:37452115-37984469
CIL_0008CZ CIL_0008CZ_0001 VISTA 3:37464508-38067589
CIL_00099X CIL_00099X_0001 VISTA 3:37469210-38073013

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000118352 Gm11703-001 processed_pseudogene Mus_musculus 0 326
ENSMUST00000118790 Gm11443-001 processed_pseudogene Mus_musculus 0 289
ENSMUST00000117491 Gm14336-001 processed_pseudogene Mus_musculus 1e-35 154
ENSMUST00000130005 Rpl21-ps8-001 processed_pseudogene Mus_musculus 2e-33 147
ENSMUST00000121662 Gm14053-001 processed_pseudogene Mus_musculus 1e-30 137
ENSMUST00000178657 Gm10045-001 processed_pseudogene Mus_musculus 6e-29 132
ENSMUST00000118772 Gm11975-001 processed_pseudogene Mus_musculus 3e-27 126
ENSMUST00000080223 Rpl21-ps3-201 processed_pseudogene Mus_musculus 3e-27 126
ENSMUST00000072532 Rpl21-ps13-201 processed_pseudogene Mus_musculus 3e-27 126
ENSMUST00000173269 Neu1-002 retained_intron Mus_musculus 0.000004 57
ENSMUST00000034431 Tmem170-201 protein_coding Mus_musculus 0.00005 53

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