C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ribosomal protein L5 pseudogene 25
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000441148 RPL5P25-001 ENSG00000225251 9606 - 10:13057902-13058676 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonKidneyLiverLungMuscleOvaryPlacentaTestisENST00000441148
Transcript ID Adipose Adrenal Brain Breast Colon Kidney Liver Lung Muscle Ovary Placenta Testis
ENST00000441148 0.049±0.00 0.051±0.00 0.069±0.00 0.033±0.00 0.091±0.08 0.034±0.00 0.015±0.00 0.016±0.00 0.061±0.00 0.120±0.09 0.029±0.00 0.036±0.02

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0004RC CIL_0004RC_0002 CGP 10:12349482-13099652
CIL_0004RD CIL_0004RD_0002 CGP 10:12896625-13138308
CIL_000968 CIL_000968_0001 VISTA 10:13045564-13647145

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000071523 Gm15500-001 transcribed_processed_pseudogene Mus_musculus 0 891
ENSMUST00000071641 Gm15500-002 processed_transcript Mus_musculus 0 891
ENSMUST00000082223 Rpl5-001 protein_coding Mus_musculus 0 891
ENSMUST00000121367 Rpl5-ps1-001 processed_pseudogene Mus_musculus 0 869
ENSMUST00000119057 Rpl5-ps2-001 processed_pseudogene Mus_musculus 0 848
ENSMUST00000153590 Rpl5-002 protein_coding Mus_musculus 0 710
ENSMUST00000123183 Rpl5-003 retained_intron Mus_musculus 0 597
ENSMUST00000169624 Gm19840-001 processed_pseudogene Mus_musculus 0 512
ENSMUST00000118662 Gm15616-001 processed_pseudogene Mus_musculus 0 394
ENSMUST00000118025 Gm15766-001 processed_pseudogene Mus_musculus 0 342
ENSMUST00000129944 Rpl5-004 retained_intron Mus_musculus 0 261

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