C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: nucleophosmin 1 (nucleolar phosphoprotein B23, numatrin) pseudogene 34
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000428821 NPM1P34-001 ENSG00000232054 9606 + X:124280530-124281422 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBreastColonHeartKidneyMuscleOvaryTestisENST00000428821
Transcript ID Adipose Adrenal Breast Colon Heart Kidney Muscle Ovary Testis
ENST00000428821 0.048±0.00 0.025±0.00 0.036±0.00 0.077±0.07 0.011±0.00 0.025±0.00 0.011±0.00 0.026±0.01 0.011±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000GB CIL_0000GB_0002 CGP X:123859724-124422664
CIL_0007YQ CIL_0007YQ_0001 VISTA X:123916977-124518737
CIL_0000AX CIL_0000AX_0001 CGP X:123960212-124422664

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000075641 Npm1-001 protein_coding Mus_musculus 0 802
ENSMUST00000121029 Gm14776-001 processed_pseudogene Mus_musculus 0 411
ENSMUST00000118047 Gm14681-001 processed_pseudogene Mus_musculus 0 370
ENSMUST00000164523 Gm5611-201 protein_coding Mus_musculus 0 370
ENSMUST00000093201 Npm1-006 protein_coding Mus_musculus 0 300
ENSMUST00000118871 Gm15484-001 processed_pseudogene Mus_musculus 0 283
ENSMUST00000141881 Npm1-004 processed_transcript Mus_musculus 9e-38 161

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