C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Treacher Collins-Franceschetti syndrome 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000427724 TCOF1-015 ENSG00000070814 9606 + 5:150357719-150398369 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000427724
Transcript ID Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000427724 0.687±0.00 0.802±0.00 0.177±0.00 0.834±0.00 0.977±0.00 0.521±0.00 3.156±2.17 2.574±0.52 3.099±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_00091Q CIL_00091Q_0001 VISTA 5:150006686-150608670

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IEA protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000177172 Tcof1-004 protein_coding Mus_musculus 0 473
ENSMUST00000163446 Tcof1-003 nonsense_mediated_decay Mus_musculus 0 473
ENSMUST00000176630 Tcof1-001 protein_coding Mus_musculus 0 473
ENSMUST00000175934 Tcof1-005 protein_coding Mus_musculus 0 473
ENSMUST00000177343 Tcof1-007 protein_coding Mus_musculus 0 243
ENSMUST00000176088 Tcof1-008 retained_intron Mus_musculus 0.000000000000002 90

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