C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RAD51 paralog C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000421782 RAD51C-013 ENSG00000108384 9606 + 17:58692628-58695336 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalKidneyLungPlacentaENST00000421782
Transcript ID Adipose Adrenal Kidney Lung Placenta
ENST00000421782 2.163±0.00 7.723±0.00 3.154±0.00 1.939±0.00 4.666±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000566 CIL_000566_0002 CGP 17:58692573-58985176

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0000400 IDA four-way junction DNA binding
GO:0000724 IMP double-strand break repair via homologous recombination
GO:0003677 IEA:TAS DNA binding
GO:0005515 IPI protein binding
GO:0005524 IEA ATP binding
GO:0005634 IDA nucleus
GO:0005654 TAS nucleoplasm
GO:0005657 IDA replication fork
GO:0005737 IDA cytoplasm
GO:0005739 IDA mitochondrion
GO:0006200 IEA ATP catabolic process
GO:0006281 IDA DNA repair
GO:0006310 IDA DNA recombination
GO:0007062 ISS sister chromatid cohesion
GO:0007596 TAS blood coagulation
GO:0008094 IEA DNA-dependent ATPase activity
GO:0008821 IMP crossover junction endodeoxyribonuclease activity
GO:0010971 IMP positive regulation of G2/M transition of mitotic cell cycle
GO:0033063 IDA Rad51B-Rad51C-Rad51D-XRCC2 complex
GO:0033065 IDA Rad51C-XRCC3 complex
GO:0048471 IDA perinuclear region of cytoplasm
GO:0048476 IDA Holliday junction resolvase complex

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000129400 Rad51c-003 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000153073 Rad51c-004 nonsense_mediated_decay Mus_musculus 0 479
ENSMUST00000067692 Rad51c-002 protein_coding Mus_musculus 0 479
ENSMUST00000007790 Rad51c-001 protein_coding Mus_musculus 0 335

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