C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ssu-2 homolog (C. elegans)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000420394 SSUH2-003 ENSG00000125046 9606 - 3:8619406-8652061 nonsense_mediated_decay

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalHeartKidneyOvaryPlacentaENST00000420394
Transcript ID Adrenal Heart Kidney Ovary Placenta
ENST00000420394 0.175±0.00 0.222±0.00 0.214±0.00 0.484±0.21 0.117±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000001 CIL_000001_0001 CGP 3:8501707-8745040
CIL_0005S5 CIL_0005S5_0001 CGP 3:8619400-8841808

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000060847 Ssu2-001 protein_coding Mus_musculus 0 806
ENSMUST00000143134 Ssu2-002 processed_transcript Mus_musculus 0 523
ENSMUST00000123254 Ssu2-003 retained_intron Mus_musculus 0 357

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