C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: actin, beta pseudogene 7
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000418351 ACTBP7-001 ENSG00000185607 9606 - 15:43989061-43990184 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartKidneyLiverLungMuscleOvaryTestisENST00000418351
Transcript ID Adipose Adrenal Brain Breast Colon Heart Kidney Liver Lung Muscle Ovary Testis
ENST00000418351 0.074±0.00 0.082±0.00 0.330±0.07 0.047±0.00 0.103±0.00 0.018±0.00 0.130±0.00 0.037±0.00 0.041±0.00 0.035±0.00 0.095±0.08 0.197±0.08

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0007WI CIL_0007WI_0001 VISTA 15:43579049-44181693
CIL_00067Y CIL_00067Y_0001 CGP 15:43826963-44195252
CIL_000687 CIL_000687_0001 CGP 15:43870761-44415758

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000100497 Actb-001 protein_coding Mus_musculus 0 1122
ENSMUST00000106215 Actg1-201 protein_coding Mus_musculus 0 1011
ENSMUST00000071555 Actg1-001 protein_coding Mus_musculus 0 1011
ENSMUST00000121430 Gm12715-001 processed_pseudogene Mus_musculus 0 1000
ENSMUST00000082300 Gm8399-201 pseudogene Mus_musculus 0 952
ENSDART00000054987 actb1-001 protein_coding Danio_rerio 0 904
ENSMUST00000078717 Lrrc58-001 protein_coding Mus_musculus 0 889
ENSMUST00000119947 Gm15725-001 transcribed_processed_pseudogene Mus_musculus 0 881
ENSMUST00000034453 Acta1-201 protein_coding Mus_musculus 0 822
ENSMUST00000171419 Actb-007 protein_coding Mus_musculus 0 769
ENSMUST00000120059 Gm5388-001 processed_pseudogene Mus_musculus 0 767
ENSMUST00000167721 Actb-002 protein_coding Mus_musculus 0 761
ENSDART00000055136 actc1b-201 protein_coding Danio_rerio 0 760
ENSDART00000058629 acta1b-001 protein_coding Danio_rerio 0 754
ENSDART00000052838 acta1a-001 protein_coding Danio_rerio 0 710
ENSMUST00000118518 Gm12003-001 processed_pseudogene Mus_musculus 0 660
ENSMUST00000131103 Actg1-002 nonsense_mediated_decay Mus_musculus 0 604
ENSMUST00000119663 Gm4760-001 processed_pseudogene Mus_musculus 0 599
ENSDART00000066430 acta2-201 protein_coding Danio_rerio 0 595
ENSDART00000149990 acta2-001 protein_coding Danio_rerio 0 555
ENSMUST00000128055 Actg1-005 protein_coding Mus_musculus 0 527
ENSMUST00000106216 Actb-006 protein_coding Mus_musculus 0 455
ENSMUST00000165629 Actb-008 retained_intron Mus_musculus 0 370
ENSMUST00000167386 Actb-003 processed_transcript Mus_musculus 0 370
ENSMUST00000062147 Actg1-006 protein_coding Mus_musculus 0 355
ENSMUST00000099636 Actg-ps1-201 processed_pseudogene Mus_musculus 0 346
ENSMUST00000165006 Gm17228-001 processed_pseudogene Mus_musculus 0 335
ENSMUST00000156343 Actg1-004 retained_intron Mus_musculus 0 335
ENSMUST00000141406 Actg1-007 retained_intron Mus_musculus 0 335
ENSMUST00000149888 Gm14747-001 processed_pseudogene Mus_musculus 0 285
ENSMUST00000164765 Actb-005 retained_intron Mus_musculus 0 279
ENSMUST00000089616 Actg1-009 protein_coding Mus_musculus 0 235
ENSMUST00000144868 Actg1-003 retained_intron Mus_musculus 0 189
ENSMUST00000060062 Actrt2-001 protein_coding Mus_musculus 0.0000004 60

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