C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: musashi RNA-binding protein 2
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000416426 MSI2-002 ENSG00000153944 9606 + 17:57255851-57680121 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderKidneyENST00000416426
Transcript ID Bladder Kidney
ENST00000416426 8.760±0.00 2.151±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000880 CIL_000880_0001 VISTA 17:57137969-57739404
CIL_0008GV CIL_0008GV_0001 VISTA 17:57172762-57775247
CIL_0007R8 CIL_0007R8_0001 VISTA 17:57241317-57842812

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000092794 Msi2-006 protein_coding Mus_musculus 0 2139
ENSMUST00000107909 Msi2-001 protein_coding Mus_musculus 0 1123
ENSDART00000050649 msi2b-005 protein_coding Danio_rerio 0 689
ENSDART00000100194 msi2b-001 protein_coding Danio_rerio 0 689
ENSMUST00000148013 Msi2-007 retained_intron Mus_musculus 0 684
ENSMUST00000138790 Msi2-002 retained_intron Mus_musculus 0 632
ENSDART00000152414 msi2b-011 protein_coding Danio_rerio 0 630
ENSDART00000099473 msi2a-201 protein_coding Danio_rerio 0 608
ENSDART00000132096 msi2a-001 protein_coding Danio_rerio 0 608
ENSDART00000145918 msi2b-015 protein_coding Danio_rerio 0 606
ENSMUST00000144699 Msi2-003 protein_coding Mus_musculus 0 573
ENSDART00000156160 msi2b-008 protein_coding Danio_rerio 0 573
ENSDART00000154311 msi2b-002 retained_intron Danio_rerio 0 449
ENSMUST00000107908 Msi2-005 protein_coding Mus_musculus 0 442
ENSMUST00000126293 Msi2-004 processed_transcript Mus_musculus 0 440
ENSDART00000152330 msi2b-009 protein_coding Danio_rerio 0 392
ENSDART00000152790 msi2b-010 protein_coding Danio_rerio 0 374
ENSDART00000154714 msi2b-004 protein_coding Danio_rerio 0 372
ENSDART00000141183 msi2a-003 retained_intron Danio_rerio 0 363
ENSDART00000156914 msi2b-003 protein_coding Danio_rerio 0 340
ENSDART00000041634 msi1-201 protein_coding Danio_rerio 0 339
ENSDART00000097427 msi1-001 protein_coding Danio_rerio 0 339
ENSDART00000134104 msi2a-004 retained_intron Danio_rerio 0 333
ENSDART00000135642 msi2a-002 retained_intron Danio_rerio 0 333
ENSDART00000134822 msi1-004 protein_coding Danio_rerio 0 283
ENSDART00000138380 msi1-002 retained_intron Danio_rerio 0 265

Loading