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Institute of Cardiovascular Regeneration Webtool Repository

C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info

Description: NIF3 NGG1 interacting factor 3-like 1 (S. cerevisiae)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000409588 NIF3L1-005 ENSG00000196290 9606 + 2:200891917-200903925 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastHeartLiverLungOvaryPlacentaENST00000409588
Transcript ID Breast Heart Liver Lung Ovary Placenta
ENST00000409588 2.499±0.00 2.151±0.00 2.106±0.00 0.762±0.00 4.664±0.00 4.377±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0002AV CIL_0002AV_0001 CGP 2:200870907-200903930
CIL_0002AW CIL_0002AW_0001 CGP 2:200889327-200963680

Gene Ontology

GO IDEvidence TypeGO Description
GO:0003934 IEA GTP cyclohydrolase I activity
GO:0005515 IPI protein binding
GO:0005525 IEA GTP binding
GO:0005737 IDA cytoplasm
GO:0008134 IPI transcription factor binding
GO:0035998 IEA 7,8-dihydroneopterin 3'-triphosphate biosynthetic process
GO:0045893 IDA positive regulation of transcription, DNA-templated
GO:0046872 IEA metal ion binding

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000171597 Nif3l1-201 protein_coding Mus_musculus 0 745
ENSMUST00000114337 Nif3l1-002 protein_coding Mus_musculus 0 745
ENSMUST00000087521 Nif3l1-001 protein_coding Mus_musculus 0 745
ENSMUST00000129759 Nif3l1-004 nonsense_mediated_decay Mus_musculus 0 497
ENSMUST00000151272 Nif3l1-003 protein_coding Mus_musculus 0 449

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