C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: high mobility group box 3 pseudogene 18
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000406327 HMGB3P18-001 ENSG00000220184 9606 - 6:121858179-121858768 processed_pseudogene

Expression Patterns

Heat Map
Numeric Values
Transcript'; PlacentaTestisENST00000406327
Transcript ID Placenta Testis
ENST00000406327 0.177±0.00 0.288±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008YX CIL_0008YX_0001 VISTA 6:121706861-122311266

Gene Ontology

GO IDEvidence TypeGO Description
No GO terms available.

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000078030 Gm6104-201 protein_coding Mus_musculus 0 551
ENSMUST00000088874 Hmgb3-004 protein_coding Mus_musculus 0 551
ENSMUST00000114582 Hmgb3-003 protein_coding Mus_musculus 0 551
ENSMUST00000015361 Hmgb3-002 protein_coding Mus_musculus 0 551
ENSMUST00000072699 Hmgb3-001 protein_coding Mus_musculus 0 551
ENSMUST00000132145 Hmgb3-006 retained_intron Mus_musculus 0 545
ENSMUST00000121238 Gm11805-001 processed_pseudogene Mus_musculus 0 514
ENSMUST00000176139 Gm18367-001 processed_pseudogene Mus_musculus 0 459
ENSMUST00000123100 Hmgb3-005 protein_coding Mus_musculus 0 449

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