C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: RNA binding motif protein, X-linked-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000399794 RBMXL1-201 ENSG00000213516 9606 - 1:88979459-88992960 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBrainBreastKidneyLiverOvaryPlacentaTestisENST00000399794
Transcript ID Adrenal Brain Breast Kidney Liver Ovary Placenta Testis
ENST00000399794 2.424±0.00 3.272±0.00 1.062±0.00 0.947±0.00 1.351±0.00 0.794±0.00 1.331±0.39 2.337±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000166 IEA nucleotide binding
GO:0003676 IEA nucleic acid binding
GO:0003723 IEA RNA binding
GO:0003727 IEA single-stranded RNA binding
GO:0005515 IEA protein binding
GO:0005634 IEA nucleus
GO:0005681 IEA spliceosomal complex
GO:0006376 IEA mRNA splice site selection
GO:0006397 IEA mRNA processing
GO:0008380 IEA RNA splicing
GO:0030529 IEA ribonucleoprotein complex
GO:0045893 IEA positive regulation of transcription, DNA-templated

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000114726 Rbmx-002 protein_coding Mus_musculus 0 2041
ENSMUST00000114730 Rbmx-005 protein_coding Mus_musculus 0 2039
ENSMUST00000049245 Rbmxl1-201 protein_coding Mus_musculus 0 1748
ENSMUST00000143310 Rbmx-003 protein_coding Mus_musculus 0 1500
ENSMUST00000094051 Gm7324-001 processed_pseudogene Mus_musculus 0 1485
ENSMUST00000098470 Rbmx-004 protein_coding Mus_musculus 0 1245
ENSMUST00000140384 Rbmx-001 nonsense_mediated_decay Mus_musculus 0 1149
ENSMUST00000133346 Rbmx-006 protein_coding Mus_musculus 0 418

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