C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: paired box 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000398485 PAX1-001 ENSG00000125813 9606 + 20:21705659-21715982 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastLungMuscleOvaryPlacentaTestisENST00000398485
Transcript ID Breast Lung Muscle Ovary Placenta Testis
ENST00000398485 0.031±0.00 0.125±0.00 0.289±0.00 0.022±0.00 0.017±0.00 0.058±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0008VN CIL_0008VN_0001 VISTA 20:21207913-21809383
CIL_0001U0 CIL_0001U0_0001 CGP 20:21511010-21718486
CIL_0002XI CIL_0002XI_0001 CGP 20:21705659-22585455

Gene Ontology

GO IDEvidence TypeGO Description
GO:0001501 TAS skeletal system development
GO:0001756 IEA somitogenesis
GO:0003677 IEA DNA binding
GO:0005634 IEA nucleus
GO:0006355 IEA regulation of transcription, DNA-templated
GO:0006366 TAS transcription from RNA polymerase II promoter
GO:0007389 IEA pattern specification process
GO:0008283 IEA cell proliferation
GO:0043367 IEA CD4-positive, alpha-beta T cell differentiation
GO:0043374 IEA CD8-positive, alpha-beta T cell differentiation
GO:0045944 IEA positive regulation of transcription from RNA polymerase II promoter
GO:0048538 IEA thymus development
GO:0060017 IEA parathyroid gland development
GO:0060349 IEA bone morphogenesis
GO:0061056 IEA sclerotome development

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000109968 Pax1-001 protein_coding Mus_musculus 0 1480
ENSMUST00000126068 Pax1-002 protein_coding Mus_musculus 0 1042
ENSMUST00000001538 Pax9-201 protein_coding Mus_musculus 0 416
ENSMUST00000152848 Pax9-002 retained_intron Mus_musculus 0 416
ENSMUST00000153250 Pax9-001 protein_coding Mus_musculus 0 416

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