C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: exosome component 3
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000396521 EXOSC3-002 ENSG00000107371 9606 - 9:37780607-37785064 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; OvaryPlacentaTestisENST00000396521
Transcript ID Ovary Placenta Testis
ENST00000396521 39.867±0.00 29.506±0.00 57.744±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0006TI CIL_0006TI_0001 CGP 9:37651000-37778972
CIL_00081A CIL_00081A_0001 VISTA 9:37738698-38340102
CIL_0006TH CIL_0006TH_0001 CGP 9:37753803-37801437
CIL_0006TG CIL_0006TG_0001 CGP 9:37766978-37867666

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000175 NAS 3'-5'-exoribonuclease activity
GO:0000176 IDA nuclear exosome (RNase complex)
GO:0000177 IDA cytoplasmic exosome (RNase complex)
GO:0000178 IDA exosome (RNase complex)
GO:0000288 TAS nuclear-transcribed mRNA catabolic process, deadenylation-dependent decay
GO:0003723 IEA RNA binding
GO:0005515 IPI protein binding
GO:0005634 IDA nucleus
GO:0005730 IDA nucleolus
GO:0005737 IDA cytoplasm
GO:0005829 TAS cytosol
GO:0006364 IDA rRNA processing
GO:0010467 TAS gene expression
GO:0016070 TAS RNA metabolic process
GO:0016071 TAS mRNA metabolic process
GO:0035327 IMP transcriptionally active chromatin
GO:0043928 IMP exonucleolytic nuclear-transcribed mRNA catabolic process involved in deadenylation-dependent decay
GO:0045006 IDA DNA deamination
GO:0045190 ISS isotype switching
GO:0071034 IMP CUT catabolic process
GO:0090503 NAS RNA phosphodiester bond hydrolysis, exonucleolytic

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000143111 Exosc3-003 processed_transcript Mus_musculus 0 521
ENSMUST00000130843 Exosc3-002 processed_transcript Mus_musculus 0 416
ENSMUST00000030003 Exosc3-001 protein_coding Mus_musculus 0 416
ENSMUST00000152056 Exosc3-004 protein_coding Mus_musculus 0 220

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