C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Meckel syndrome, type 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000393119 MKS1-003 ENSG00000011143 9606 - 17:58205437-58219305 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdrenalBladderBrainColonHeartKidneyOvaryPlacentaTestisENST00000393119
Transcript ID Adrenal Bladder Brain Colon Heart Kidney Ovary Placenta Testis
ENST00000393119 3.247±0.00 0.274±0.00 1.191±0.00 0.399±0.00 1.231±0.00 0.815±0.00 3.249±2.03 2.496±1.00 4.246±0.00

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 IEA centriole
GO:0016020 IEA membrane
GO:0035869 IEA ciliary transition zone
GO:0036038 ISS TCTN-B9D complex
GO:0036064 IDA ciliary basal body
GO:0042384 IMP cilium assembly
GO:0048754 IEA branching morphogenesis of an epithelial tube
GO:0060271 ISS cilium morphogenesis

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000038196 Mks1-001 protein_coding Mus_musculus 0 1899
ENSMUST00000130135 Mks1-004 retained_intron Mus_musculus 0 985
ENSMUST00000153729 Mks1-002 retained_intron Mus_musculus 0 769
ENSMUST00000135369 Mks1-003 retained_intron Mus_musculus 0 468

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