C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: SET binding factor 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000390679 SBF1-201 ENSG00000100241 9606 - 22:50447142-50475025 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastColonHeartLiverMuscleOvaryPlacentaTestisENST00000390679
Transcript ID Bladder Brain Breast Colon Heart Liver Muscle Ovary Placenta Testis
ENST00000390679 1.534±0.00 8.101±3.11 1.890±0.00 1.688±0.00 1.730±0.00 1.859±0.00 4.268±0.00 4.405±1.11 6.501±2.59 60.448±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0000V2 CIL_0000V2_0002 CGP 22:50309030-50445090
CIL_00024L CIL_00024L_0001 CGP 22:50343304-50475025
CIL_0000IR CIL_0000IR_0001 CGP 22:50445000-50486440

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005634 IEA nucleus
GO:0006470 TAS protein dephosphorylation
GO:0008138 TAS protein tyrosine/serine/threonine phosphatase activity
GO:0008219 IEA cell death
GO:0016021 TAS integral component of membrane
GO:0016311 IEA dephosphorylation
GO:0016791 IEA phosphatase activity
GO:0017112 IDA Rab guanyl-nucleotide exchange factor activity
GO:0032851 IDA positive regulation of Rab GTPase activity

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000123791 Sbf1-001 protein_coding Mus_musculus 0 6416
ENSMUST00000124576 Sbf1-002 nonsense_mediated_decay Mus_musculus 0 6324
ENSMUST00000144585 Sbf1-003 protein_coding Mus_musculus 0 4420
ENSDART00000109452 sbf1-001 protein_coding Danio_rerio 0 1131
ENSDART00000091599 sbf1-201 protein_coding Danio_rerio 0 1123
ENSMUST00000175778 Sbf1-011 protein_coding Mus_musculus 0 985
ENSMUST00000176028 Sbf1-012 retained_intron Mus_musculus 0 802
ENSMUST00000124398 Sbf1-009 retained_intron Mus_musculus 0 774
ENSMUST00000146637 Sbf1-004 protein_coding Mus_musculus 0 697
ENSMUST00000150539 Sbf1-008 retained_intron Mus_musculus 0 507
ENSMUST00000155146 Sbf1-007 retained_intron Mus_musculus 0 496
ENSMUST00000124642 Sbf1-005 nonsense_mediated_decay Mus_musculus 0 466
ENSMUST00000176277 Sbf1-014 retained_intron Mus_musculus 0 340

Loading