C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: cholinergic receptor, nicotinic, gamma (muscle)
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000389494 CHRNG-001 ENSG00000196811 9606 + 2:232539727-232546403 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BrainMuscleOvaryPlacentaTestisENST00000389494
Transcript ID Brain Muscle Ovary Placenta Testis
ENST00000389494 0.098±0.00 2.926±0.00 0.120±0.04 0.027±0.00 0.173±0.04

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003HU CIL_0003HU_0001 CGP 2:232525993-232546403

Gene Ontology

GO IDEvidence TypeGO Description
GO:0004889 IEA acetylcholine-activated cation-selective channel activity
GO:0005230 IEA extracellular ligand-gated ion channel activity
GO:0005515 IEA protein binding
GO:0005886 TAS plasma membrane
GO:0005887 TAS integral component of plasma membrane
GO:0005892 IEA acetylcholine-gated channel complex
GO:0006810 TAS:IEA transport
GO:0006811 IEA ion transport
GO:0006812 IEA cation transport
GO:0006936 TAS muscle contraction
GO:0007165 TAS signal transduction
GO:0007268 TAS synaptic transmission
GO:0015267 TAS channel activity
GO:0015464 TAS acetylcholine receptor activity
GO:0016020 IEA membrane
GO:0030054 IEA cell junction
GO:0042391 IEA regulation of membrane potential
GO:0045211 IEA postsynaptic membrane
GO:0055085 TAS transmembrane transport
GO:0098655 IEA cation transmembrane transport

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000027470 Chrng-001 protein_coding Mus_musculus 0 1816
ENSMUST00000186038 Chrng-003 protein_coding Mus_musculus 0 649
ENSMUST00000189392 Chrng-004 retained_intron Mus_musculus 0 568
ENSMUST00000185763 Chrng-002 protein_coding Mus_musculus 0 479

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