C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: lysine (K)-specific demethylase 4C
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000381306 KDM4C-002 ENSG00000107077 9606 + 9:6757656-7170932 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BreastKidneyLiverLungENST00000381306
Transcript ID Breast Kidney Liver Lung
ENST00000381306 1.631±0.00 0.776±0.00 0.834±0.00 1.527±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0001D7 CIL_0001D7_0001 CGP 9:6757641-7888380

Gene Ontology

GO IDEvidence TypeGO Description
GO:0000790 IDA nuclear chromatin
GO:0005515 IEA protein binding
GO:0006351 IEA transcription, DNA-templated
GO:0006357 IDA regulation of transcription from RNA polymerase II promoter
GO:0008270 IEA zinc ion binding
GO:0008284 IMP positive regulation of cell proliferation
GO:0019899 IPI enzyme binding
GO:0032454 IMP histone demethylase activity (H3-K9 specific)
GO:0033169 IMP histone H3-K9 demethylation
GO:0050681 IPI androgen receptor binding
GO:0051213 IEA dioxygenase activity
GO:0055114 IEA oxidation-reduction process

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000030102 Kdm4c-001 protein_coding Mus_musculus 0 1578
ENSMUST00000077851 Kdm4c-006 protein_coding Mus_musculus 0 1578
ENSMUST00000156065 Kdm4c-004 processed_transcript Mus_musculus 0 1447
ENSDART00000024302 kdm4ab-201 protein_coding Danio_rerio 0 442
ENSMUST00000150439 Kdm4c-002 processed_transcript Mus_musculus 0 278
ENSMUST00000148753 Kdm4c-003 processed_transcript Mus_musculus 0 204
ENSMUST00000149295 Kdm4c-005 protein_coding Mus_musculus 0 198

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