C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: katanin p60 subunit A-like 1
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000380615 KATNAL1-001 ENSG00000102781 9606 - 13:30202630-30307484 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeAdrenalBrainBreastColonHeartLiverLungMuscleOvaryPlacentaTestisENST00000380615
Transcript ID Adipose Adrenal Brain Breast Colon Heart Liver Lung Muscle Ovary Placenta Testis
ENST00000380615 1.248±0.00 0.706±0.00 3.545±0.31 1.478±0.46 1.534±1.29 2.583±1.01 0.552±0.00 1.322±0.20 0.572±0.49 0.550±0.17 0.472±0.00 3.418±0.05

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_0003E1 CIL_0003E1_0001 CGP 13:29764371-30307484

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005524 IEA ATP binding
GO:0005737 IEA cytoplasm
GO:0005874 IEA microtubule
GO:0006281 IEA DNA repair
GO:0006310 IEA DNA recombination
GO:0007283 IEA spermatogenesis
GO:0008017 IEA microtubule binding
GO:0008568 IEA microtubule-severing ATPase activity
GO:0009378 IEA four-way junction helicase activity
GO:0015630 IEA microtubule cytoskeleton
GO:0051013 IEA microtubule severing

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000047257 Katnal1-001 protein_coding Mus_musculus 0 1591
ENSMUST00000110508 Katnal1-002 processed_transcript Mus_musculus 0 1277
ENSMUST00000110509 Katnal1-003 protein_coding Mus_musculus 0 771
ENSMUST00000147473 Katnal1-007 protein_coding Mus_musculus 0 667
ENSMUST00000148884 Blzf1-004 retained_intron Mus_musculus 0.0001 55

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