C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: ciliary rootlet coiled-coil, rootletin
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375541 CROCC-001 ENSG00000058453 9606 + 1:16921950-16972979 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainHeartKidneyLiverMuscleOvaryPlacentaTestisENST00000375541
Transcript ID Adipose Brain Heart Kidney Liver Muscle Ovary Placenta Testis
ENST00000375541 0.740±0.00 0.426±0.00 1.215±0.00 1.608±0.00 0.365±0.00 0.946±0.00 10.713±8.24 1.401±0.83 1.696±0.34

Conserved Regions

Gene is not located within a conserved region.

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005198 ISS structural molecule activity
GO:0005515 IPI protein binding
GO:0005737 IDA cytoplasm
GO:0005813 IDA centrosome
GO:0005814 ISS centriole
GO:0005886 IDA plasma membrane
GO:0007049 IEA cell cycle
GO:0008104 IMP protein localization
GO:0010457 IMP centriole-centriole cohesion
GO:0015629 IDA actin cytoskeleton
GO:0016020 IEA membrane
GO:0016192 IEA vesicle-mediated transport
GO:0019894 ISS kinesin binding
GO:0030030 IEA cell projection organization
GO:0033365 IMP protein localization to organelle
GO:0035253 ISS ciliary rootlet
GO:0051297 IDA centrosome organization
GO:0070062 IDA extracellular vesicular exosome

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000102491 Crocc-002 protein_coding Mus_musculus 0 5548
ENSMUST00000040222 Crocc-201 protein_coding Mus_musculus 0 4951
ENSMUST00000168157 Crocc-202 protein_coding Mus_musculus 0 4951
ENSMUST00000097816 Crocc-001 protein_coding Mus_musculus 0 4951
ENSMUST00000151455 Crocc-009 retained_intron Mus_musculus 0 2095
ENSMUST00000124286 Crocc-005 retained_intron Mus_musculus 0 857
ENSMUST00000122846 Crocc-006 retained_intron Mus_musculus 0 529
ENSMUST00000126863 Crocc-003 retained_intron Mus_musculus 0 398
ENSMUST00000137721 Crocc-004 retained_intron Mus_musculus 0 392
ENSMUST00000144196 Crocc-010 protein_coding Mus_musculus 0 339

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