C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375415 ARHGEF10L-003 ENSG00000074964 9606 + 1:17580553-17697649 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; BladderBrainBreastKidneyLiverLungMuscleOvaryPlacentaENST00000375415
Transcript ID Bladder Brain Breast Kidney Liver Lung Muscle Ovary Placenta
ENST00000375415 2.905±0.00 0.682±0.00 0.727±0.00 6.773±0.00 0.809±0.00 1.736±0.00 3.754±0.00 1.810±0.59 1.174±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000236 CIL_000236_0002 CGP 1:17406760-17697874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0005737 IEA cytoplasm
GO:0032321 IEA positive regulation of Rho GTPase activity
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000069623 Arhgef10l-001 protein_coding Mus_musculus 0 4098
ENSMUST00000097820 Arhgef10l-002 protein_coding Mus_musculus 0 4012
ENSMUST00000105799 Arhgef10l-003 protein_coding Mus_musculus 0 3537
ENSMUST00000105798 Arhgef10l-004 protein_coding Mus_musculus 0 3535
ENSMUST00000039204 Arhgef10l-007 protein_coding Mus_musculus 0 3450
ENSMUST00000105797 Arhgef10l-005 protein_coding Mus_musculus 0 2621
ENSMUST00000138493 Arhgef10l-006 nonsense_mediated_decay Mus_musculus 0 2010
ENSMUST00000147426 Arhgef10l-009 protein_coding Mus_musculus 0 719
ENSMUST00000140403 Arhgef10l-010 nonsense_mediated_decay Mus_musculus 0 649
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 0 455
ENSMUST00000143614 Arhgef10l-012 protein_coding Mus_musculus 0 444
ENSMUST00000154979 Arhgef10l-008 protein_coding Mus_musculus 0 322
ENSMUST00000125045 Arhgef10l-011 retained_intron Mus_musculus 0 204
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 0 195

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