C-It-Loci: A knowledge database for tissue-enriched loci.

Institute of Cardiovascular Regeneration, Goethe-University Frankfurt am Main

Transcript Info
Description: Rho guanine nucleotide exchange factor (GEF) 10-like
Transcript Accession Transcript Name Contained in Gene Tax ID Strand Position Biotype
ENST00000375408 ARHGEF10L-002 ENSG00000074964 9606 + 1:17618316-17697868 protein_coding

Expression Patterns

Heat Map
Numeric Values
Transcript'; AdiposeBrainBreastColonHeartLungMuscleOvaryPlacentaTestisENST00000375408
Transcript ID Adipose Brain Breast Colon Heart Lung Muscle Ovary Placenta Testis
ENST00000375408 1.466±0.00 1.621±0.00 3.386±0.00 1.517±0.00 4.042±3.45 2.131±1.65 18.048±0.00 3.415±2.90 2.170±0.95 1.270±0.00

Conserved Regions

Region IDSub-RegionRegion TypePosition
CIL_000236 CIL_000236_0002 CGP 1:17406760-17697874

Gene Ontology

GO IDEvidence TypeGO Description
GO:0005089 IEA Rho guanyl-nucleotide exchange factor activity
GO:0005515 IEA protein binding
GO:0035023 IEA regulation of Rho protein signal transduction

Homologs

ENSEMBL Accession Gene Name Biotype Species E-Value Bit Score
ENSMUST00000039204 Arhgef10l-007 protein_coding Mus_musculus 0 3360
ENSMUST00000097820 Arhgef10l-002 protein_coding Mus_musculus 0 3360
ENSMUST00000105798 Arhgef10l-004 protein_coding Mus_musculus 0 3291
ENSMUST00000105799 Arhgef10l-003 protein_coding Mus_musculus 0 3291
ENSMUST00000069623 Arhgef10l-001 protein_coding Mus_musculus 0 3291
ENSMUST00000105797 Arhgef10l-005 protein_coding Mus_musculus 0 2689
ENSMUST00000138493 Arhgef10l-006 nonsense_mediated_decay Mus_musculus 0 2080
ENSMUST00000147426 Arhgef10l-009 protein_coding Mus_musculus 0 928
ENSMUST00000140403 Arhgef10l-010 nonsense_mediated_decay Mus_musculus 0 649
ENSDART00000111966 arhgef10lb-201 protein_coding Danio_rerio 0 497
ENSDART00000134741 arhgef10lb-001 protein_coding Danio_rerio 0 193

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